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Augustus 3.4.0
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This is the complete list of members for Alignment, including all inherited members.
| Alignment(size_t k) (defined in Alignment) | Alignment | inline |
| aliLen (defined in Alignment) | Alignment | |
| capAliSize | Alignment | friend |
| getCumFragLen() const (defined in Alignment) | Alignment | |
| getMaxSeqIdLen() const (defined in Alignment) | Alignment | |
| getSignature() const (defined in Alignment) | Alignment | |
| maxRange() (defined in Alignment) | Alignment | |
| medianChrStartEndDiff (defined in Alignment) | Alignment | friend |
| merge(Alignment *other, const MsaSignature *sig=NULL) (defined in Alignment) | Alignment | |
| mergeable (defined in Alignment) | Alignment | friend |
| mergeAliList (defined in Alignment) | Alignment | friend |
| numFilledRows() const (defined in Alignment) | Alignment | |
| numFitting(const MsaSignature *sig) const (defined in Alignment) | Alignment | |
| numRows() const (defined in Alignment) | Alignment | inline |
| operator<< (defined in Alignment) | Alignment | friend |
| pack() (defined in Alignment) | Alignment | |
| printTextGraph(ostream &strm) (defined in Alignment) | Alignment | |
| reduceOvlpRanges (defined in Alignment) | Alignment | friend |
| rows (defined in Alignment) | Alignment | |
| shiftAliPositions(int offset) (defined in Alignment) | Alignment | |
| ~Alignment() (defined in Alignment) | Alignment | inline |
1.9.8