Alignment Member List

This is the complete list of members for Alignment, including all inherited members.

Alignment(size_t k) (defined in Alignment)	Alignment	inline
aliLen (defined in Alignment)	Alignment
capAliSize(list< Alignment * > &alis, int maxRange)	Alignment	friend
getCumFragLen() const (defined in Alignment)	Alignment
getMaxSeqIdLen() const (defined in Alignment)	Alignment
getSignature() const (defined in Alignment)	Alignment
maxRange() (defined in Alignment)	Alignment
medianChrStartEndDiff (defined in Alignment)	Alignment	friend
merge(Alignment *other, const MsaSignature *sig=NULL) (defined in Alignment)	Alignment
mergeable (defined in Alignment)	Alignment	friend
mergeAliList (defined in Alignment)	Alignment	friend
numFilledRows() const (defined in Alignment)	Alignment
numFitting(const MsaSignature *sig) const (defined in Alignment)	Alignment
numRows() const (defined in Alignment)	Alignment	inline
operator<< (defined in Alignment)	Alignment	friend
pack() (defined in Alignment)	Alignment
printTextGraph(ostream &strm) (defined in Alignment)	Alignment
reduceOvlpRanges (defined in Alignment)	Alignment	friend
rows (defined in Alignment)	Alignment
shiftAliPositions(int offset) (defined in Alignment)	Alignment
~Alignment() (defined in Alignment)	Alignment	inline