AlignmentRow Member List
This is the complete list of members for AlignmentRow, including all inherited members.
| addFragment(int chrPos, int aliPos, int len) (defined in AlignmentRow) | AlignmentRow | |
| addFragment(fragment &f) (defined in AlignmentRow) | AlignmentRow | inline |
| aliEnd() const (defined in AlignmentRow) | AlignmentRow | |
| AlignmentRow() (defined in AlignmentRow) | AlignmentRow | inline |
| AlignmentRow(string seqID, int chrPos, Strand strand, string rowbuffer) (defined in AlignmentRow) | AlignmentRow | |
| appendRow(AlignmentRow **r1, const AlignmentRow *r2, int aliLen1, string sigstr) | AlignmentRow | friend |
| chrEnd() const (defined in AlignmentRow) | AlignmentRow | |
| chrStart() const (defined in AlignmentRow) | AlignmentRow | |
| frags (defined in AlignmentRow) | AlignmentRow | |
| gapLenAfterFrag(size_t i) const (defined in AlignmentRow) | AlignmentRow | inline |
| getAliPos(int chrPos, vector< fragment >::const_iterator from) | AlignmentRow | |
| getAliPos(int chrPos, vector< fragment >::const_iterator *from) (defined in AlignmentRow) | AlignmentRow | |
| getAliPos(int chrPos) (defined in AlignmentRow) | AlignmentRow | inline |
| getChrPos(int aliPos, vector< fragment >::const_iterator from) (defined in AlignmentRow) | AlignmentRow | |
| getChrPos(int aliPos) (defined in AlignmentRow) | AlignmentRow | inline |
| getCumFragLen() const (defined in AlignmentRow) | AlignmentRow | inline |
| getSeqLen() const (defined in AlignmentRow) | AlignmentRow | inline |
| getSignature() const (defined in AlignmentRow) | AlignmentRow | inline |
| operator<< (defined in AlignmentRow) | AlignmentRow | friend |
| pack() (defined in AlignmentRow) | AlignmentRow | |
| seqID (defined in AlignmentRow) | AlignmentRow | |
| setCumFragLen(int len) (defined in AlignmentRow) | AlignmentRow | inline |
| strand (defined in AlignmentRow) | AlignmentRow | |
| ~AlignmentRow() (defined in AlignmentRow) | AlignmentRow | inline |
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