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Augustus 3.4.0
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This is the complete list of members for BaseCount, including all inherited members.
| a (defined in BaseCount) | BaseCount | |
| addCharacter(char nucleotide, bool subtract=false) (defined in BaseCount) | BaseCount | |
| addSequence(const char *sequence, int len) (defined in BaseCount) | BaseCount | |
| BaseCount() (defined in BaseCount) | BaseCount | |
| BaseCount(int a, int c, int g, int t) (defined in BaseCount) | BaseCount | |
| BaseCount(const char *sequence, int len=-1) (defined in BaseCount) | BaseCount | |
| c (defined in BaseCount) | BaseCount | |
| doubleWeight(BaseCount bc1, BaseCount bc2) (defined in BaseCount) | BaseCount | static |
| g (defined in BaseCount) | BaseCount | |
| gcContentClass(double gcContent) (defined in BaseCount) | BaseCount | static |
| gcContentClassWeight(BaseCount bc1, BaseCount bc2) (defined in BaseCount) | BaseCount | static |
| gcContentWeight(BaseCount bc1, BaseCount bc2) (defined in BaseCount) | BaseCount | static |
| init() (defined in BaseCount) | BaseCount | static |
| multiNormalKernelWeight(BaseCount bc1, BaseCount bc2) (defined in BaseCount) | BaseCount | static |
| normalize() (defined in BaseCount) | BaseCount | |
| phi(double x, double sigma) (defined in BaseCount) | BaseCount | static |
| ra (defined in BaseCount) | BaseCount | |
| rc (defined in BaseCount) | BaseCount | |
| reverse() (defined in BaseCount) | BaseCount | |
| rg (defined in BaseCount) | BaseCount | |
| rt (defined in BaseCount) | BaseCount | |
| setWeightMatrix(string matrixFileName) (defined in BaseCount) | BaseCount | static |
| t (defined in BaseCount) | BaseCount | |
| weighingMatrix (defined in BaseCount) | BaseCount | static |
| weight(BaseCount bc1, BaseCount bc2) (defined in BaseCount) | BaseCount | static |
| weithType (defined in BaseCount) | BaseCount | static |
| ~BaseCount() (defined in BaseCount) | BaseCount | inline |
1.9.8