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Augustus 3.4.0
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This is the complete list of members for BaumWelch, including all inherited members.
| addTrainingData(TrainingData *td) (defined in BaumWelch) | BaumWelch | inline |
| BaumWelch(int k, int numFrames, int modelTypes=2) (defined in BaumWelch) | BaumWelch | inline |
| classifyTrainingData() (defined in BaumWelch) | BaumWelch | |
| getContentModel(int type) (defined in BaumWelch) | BaumWelch | |
| getInputSeqs() (defined in BaumWelch) | BaumWelch | inline |
| getK() (defined in BaumWelch) | BaumWelch | inline |
| getModelTypeProb(int i) (defined in BaumWelch) | BaumWelch | inline |
| getModelTypes() (defined in BaumWelch) | BaumWelch | inline |
| getNumFrames() (defined in BaumWelch) | BaumWelch | inline |
| initialExonTrainingData(AnnoSequence *seqList) (defined in BaumWelch) | BaumWelch | |
| initialIntronTrainingData(const Gene *geneList) (defined in BaumWelch) | BaumWelch | |
| initialRandomParameters() (defined in BaumWelch) | BaumWelch | |
| initialTypeParameters(Double patpseudocount=0.0) (defined in BaumWelch) | BaumWelch | |
| printAllContentModels(ostream &out) (defined in BaumWelch) | BaumWelch | |
| printInputSeqs(ostream &out) (defined in BaumWelch) | BaumWelch | |
| readAllContentModels(istream &in) (defined in BaumWelch) | BaumWelch | |
| reestimate(Double patpseudocount=0.0) (defined in BaumWelch) | BaumWelch | |
| setK(int k) (defined in BaumWelch) | BaumWelch | inline |
| setTrainingData(TrainingData *inputSeqs) (defined in BaumWelch) | BaumWelch | inline |
1.9.8