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Augustus 3.4.0
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This is the complete list of members for Constant, including all inherited members.
| almost_identical_maxdiff (defined in Constant) | Constant | static |
| alnfile (defined in Constant) | Constant | static |
| alternatives_from_evidence (defined in Constant) | Constant | static |
| amberprob (defined in Constant) | Constant | static |
| ass_end (defined in Constant) | Constant | static |
| ass_maxbinsize (defined in Constant) | Constant | static |
| ass_size() (defined in Constant) | Constant | inlinestatic |
| ass_start (defined in Constant) | Constant | static |
| ass_upwindow_size (defined in Constant) | Constant | static |
| ass_whole_size() (defined in Constant) | Constant | inlinestatic |
| augustus_verbosity (defined in Constant) | Constant | static |
| codonalnfile (defined in Constant) | Constant | static |
| codSeqOutput (defined in Constant) | Constant | static |
| computeNumSubs (defined in Constant) | Constant | static |
| configPath (defined in Constant) | Constant | static |
| contentmodels (defined in Constant) | Constant | static |
| CRFtrainCDS (defined in Constant) | Constant | static |
| CRFtrainIgenic (defined in Constant) | Constant | static |
| CRFtrainIntron (defined in Constant) | Constant | static |
| CRFtrainSS (defined in Constant) | Constant | static |
| CRFtrainTIS (defined in Constant) | Constant | static |
| CRFtrainUTR (defined in Constant) | Constant | static |
| d_polyasig_cleavage (defined in Constant) | Constant | static |
| dbaccess (defined in Constant) | Constant | static |
| dbhints (defined in Constant) | Constant | static |
| decomp_num_at (defined in Constant) | Constant | static |
| decomp_num_gc (defined in Constant) | Constant | static |
| decomp_num_steps (defined in Constant) | Constant | static |
| dss_end (defined in Constant) | Constant | static |
| dss_gc_allowed (defined in Constant) | Constant | static |
| dss_maxbinsize (defined in Constant) | Constant | static |
| dss_size() (defined in Constant) | Constant | inlinestatic |
| dss_start (defined in Constant) | Constant | static |
| dss_whole_size() (defined in Constant) | Constant | inlinestatic |
| et_coding_len (defined in Constant) | Constant | static |
| ex_sc (defined in Constant) | Constant | static |
| exoncands (defined in Constant) | Constant | static |
| extrinsicPath() (defined in Constant) | Constant | inlinestatic |
| fullSpeciesPath() (defined in Constant) | Constant | inlinestatic |
| gc_range_max (defined in Constant) | Constant | static |
| gc_range_min (defined in Constant) | Constant | static |
| GD_stepsize (defined in Constant) | Constant | static |
| head2head_ovlp (defined in Constant) | Constant | static |
| head2tail_ovlp (defined in Constant) | Constant | static |
| in_sc (defined in Constant) | Constant | static |
| init() (defined in Constant) | Constant | static |
| init_coding_len (defined in Constant) | Constant | static |
| keep_viterbi (defined in Constant) | Constant | static |
| label_flip_prob (defined in Constant) | Constant | static |
| lambda (defined in Constant) | Constant | static |
| lg_es (defined in Constant) | Constant | static |
| logreg (defined in Constant) | Constant | static |
| max_contra_supp_ratio (defined in Constant) | Constant | static |
| max_exon_len (defined in Constant) | Constant | static |
| maxOvlp (defined in Constant) | Constant | static |
| min_coding_len (defined in Constant) | Constant | static |
| min_intron_len (defined in Constant) | Constant | static |
| modelPath() (defined in Constant) | Constant | inlinestatic |
| MultSpeciesMode (defined in Constant) | Constant | static |
| nc_option_on (defined in Constant) | Constant | static |
| ochreprob (defined in Constant) | Constant | static |
| oeExtensionWidth (defined in Constant) | Constant | static |
| opalprob (defined in Constant) | Constant | static |
| overlapmode (defined in Constant) | Constant | static |
| printEvidence (defined in Constant) | Constant | static |
| printExonCandsMSA (defined in Constant) | Constant | static |
| printGeneRangesBED (defined in Constant) | Constant | static |
| printGeneRangesGFF (defined in Constant) | Constant | static |
| printHints (defined in Constant) | Constant | static |
| printMEA (defined in Constant) | Constant | static |
| printOEs (defined in Constant) | Constant | static |
| printSampled (defined in Constant) | Constant | static |
| probNinCoding (defined in Constant) | Constant | static |
| proteinOutput (defined in Constant) | Constant | static |
| referenceFile (defined in Constant) | Constant | static |
| refSpecies (defined in Constant) | Constant | static |
| reportUtrOnlyGenes (defined in Constant) | Constant | static |
| rescaleBoni (defined in Constant) | Constant | static |
| rLogReg (defined in Constant) | Constant | static |
| softmasking (defined in Constant) | Constant | static |
| softmasking_explicitly_requested (defined in Constant) | Constant | static |
| speciesDir (defined in Constant) | Constant | static |
| speciesfilenames (defined in Constant) | Constant | static |
| subopt_transcript_threshold (defined in Constant) | Constant | static |
| tail2tail_ovlp (defined in Constant) | Constant | static |
| temperature (defined in Constant) | Constant | static |
| tieIgenicIntron (defined in Constant) | Constant | static |
| tis_maxbinsize (defined in Constant) | Constant | static |
| trans_init_window (defined in Constant) | Constant | static |
| treefile (defined in Constant) | Constant | static |
| tss_start (defined in Constant) | Constant | static |
| tss_upwindow_size (defined in Constant) | Constant | static |
| uniqueGeneId (defined in Constant) | Constant | static |
| useAArates (defined in Constant) | Constant | static |
| useCRFtraining (defined in Constant) | Constant | static |
| useNonCodingModel (defined in Constant) | Constant | static |
| utr_option_on (defined in Constant) | Constant | static |
1.9.8