DbSeqAccess Member List
This is the complete list of members for DbSeqAccess, including all inherited members.
| chrLen (defined in RandSeqAccess) | RandSeqAccess | protected |
| dbaccess (defined in DbSeqAccess) | DbSeqAccess | protected |
| DbSeqAccess(vector< string > s=vector< string >()) (defined in DbSeqAccess) | DbSeqAccess | protected |
| extrinsicFeatures (defined in RandSeqAccess) | RandSeqAccess | protected |
| getChrLen(int idx, string chrName) (defined in RandSeqAccess) | RandSeqAccess | |
| getFeatures(string speciesname, string chrName, int start, int end, Strand strand)=0 (defined in DbSeqAccess) | DbSeqAccess | pure virtual |
| getIdx(string speciesname) (defined in RandSeqAccess) | RandSeqAccess | |
| getMaxSnameLen() (defined in RandSeqAccess) | RandSeqAccess | |
| getNumSpecies() (defined in RandSeqAccess) | RandSeqAccess | inline |
| getSeq(string speciesname, string chrName, int start, int end, Strand strand)=0 (defined in DbSeqAccess) | DbSeqAccess | pure virtual |
| getSeq(size_t speciesIdx, string chrName, int start, int end, Strand strand) (defined in RandSeqAccess) | RandSeqAccess | inline |
| getSname(size_t idx) (defined in RandSeqAccess) | RandSeqAccess | inline |
| numSpecies (defined in RandSeqAccess) | RandSeqAccess | protected |
| printStats() (defined in RandSeqAccess) | RandSeqAccess | |
| RandSeqAccess() (defined in RandSeqAccess) | RandSeqAccess | inlineprotected |
| setLength(int idx, string chrName, int len) (defined in RandSeqAccess) | RandSeqAccess | |
| setSpeciesNames(vector< string > speciesNames) (defined in RandSeqAccess) | RandSeqAccess | |
| speciesIndex (defined in RandSeqAccess) | RandSeqAccess | protected |
| speciesNames (defined in RandSeqAccess) | RandSeqAccess | protected |
| withEvidence(string speciesname) (defined in RandSeqAccess) | RandSeqAccess | inline |
| ~DbSeqAccess() (defined in DbSeqAccess) | DbSeqAccess | inlinevirtual |
| ~RandSeqAccess() (defined in RandSeqAccess) | RandSeqAccess | inlinevirtual |
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1.12.0