Evo Member List

This is the complete list of members for Evo, including all inherited members.

addBranchLength(double b)=0 (defined in Evo)	Evo	pure virtual
allLogPs (defined in Evo)	Evo	protected
allPs (defined in Evo)	Evo	protected
allQs (defined in Evo)	Evo	protected
computeLogPmatrices()=0 (defined in Evo)	Evo	pure virtual
Evo(int s) (defined in Evo)	Evo	inline
expQt(double t, gsl_vector *lambda, gsl_matrix *U, gsl_matrix *Uinv) (defined in Evo)	Evo
findClosestIndex(vector< double > &v, double val) (defined in Evo)	Evo	protected
getLogPi(int i) const (defined in Evo)	Evo	inline
getNumStates() (defined in Evo)	Evo	inline
getPi(int i) const (defined in Evo)	Evo	inline
getRateMatrices() (defined in Evo)	Evo	inlinevirtual
getSubMatrixLogP(int u, double t) (defined in Evo)	Evo
getSubMatrixP(int u, double t) (defined in Evo)	Evo
getSubMatrixQ(int u) (defined in Evo)	Evo	inline
m (defined in Evo)	Evo	protected
pi (defined in Evo)	Evo	protected
printBranchLengths() (defined in Evo)	Evo
setBranchLengths(vector< double > b, int m=-1) (defined in Evo)	Evo
states (defined in Evo)	Evo	protected
times (defined in Evo)	Evo	protected
~Evo() (defined in Evo)	Evo	virtual