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Augustus 3.4.0
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This is the complete list of members for GenomicMSA, including all inherited members.
| chrLen | GenomicMSA | |
| compactify() | GenomicMSA | |
| deletePathWrt2Other(AliPath &p, AliPath &other, AlignmentGraph &g) (defined in GenomicMSA) | GenomicMSA | |
| findBestPath(AlignmentGraph &g) (defined in GenomicMSA) | GenomicMSA | |
| findGeneRanges() | GenomicMSA | |
| GenomicMSA(RandSeqAccess *rsa_) (defined in GenomicMSA) | GenomicMSA | inline |
| getBestConsensus(AlignmentGraph &g, const MsaSignature *sig, int &numNewCovered) (defined in GenomicMSA) | GenomicMSA | |
| getNextGene() (defined in GenomicMSA) | GenomicMSA | |
| numAlignments() (defined in GenomicMSA) | GenomicMSA | inline |
| printAlignment(string outFname) (defined in GenomicMSA) | GenomicMSA | |
| project(AlignmentGraph &g, const MsaSignature *sig) (defined in GenomicMSA) | GenomicMSA | |
| prunePaths(vector< AliPath > &allPaths, AlignmentGraph &g) | GenomicMSA | |
| prunePathWrt2Other(AliPath &p, Iterator pstart, Iterator pend, AliPath &other, Iterator ostart, Iterator oend, AlignmentGraph &g, bool forward) (defined in GenomicMSA) | GenomicMSA | |
| readAlignment(string alignFilename) (defined in GenomicMSA) | GenomicMSA | |
| weight(const Alignment *a, const MsaSignature *sig) (defined in GenomicMSA) | GenomicMSA | static |
| weight(const Alignment *a, const Alignment *b, const MsaSignature *sig) (defined in GenomicMSA) | GenomicMSA | static |
| writeDot(AlignmentGraph const &g, string fname, MsaSignature const *superSig=NULL) | GenomicMSA | |
| ~GenomicMSA() (defined in GenomicMSA) | GenomicMSA | inline |
1.9.8