This is the complete list of members for GenomicMSA, including all inherited members.

chrLen	GenomicMSA
compactify()	GenomicMSA
deletePathWrt2Other(AliPath &p, AliPath &other, AlignmentGraph &g) (defined in GenomicMSA)	GenomicMSA
findBestPath(AlignmentGraph &g) (defined in GenomicMSA)	GenomicMSA
findGeneRanges()	GenomicMSA
GenomicMSA(RandSeqAccess *rsa_) (defined in GenomicMSA)	GenomicMSA	inline
getBestConsensus(AlignmentGraph &g, const MsaSignature *sig, int &numNewCovered) (defined in GenomicMSA)	GenomicMSA
getNextGene() (defined in GenomicMSA)	GenomicMSA
numAlignments() (defined in GenomicMSA)	GenomicMSA	inline
printAlignment(string outFname) (defined in GenomicMSA)	GenomicMSA
project(AlignmentGraph &g, const MsaSignature *sig) (defined in GenomicMSA)	GenomicMSA
prunePaths(vector< AliPath > &allPaths, AlignmentGraph &g)	GenomicMSA
prunePathWrt2Other(AliPath &p, Iterator pstart, Iterator pend, AliPath &other, Iterator ostart, Iterator oend, AlignmentGraph &g, bool forward) (defined in GenomicMSA)	GenomicMSA
readAlignment(string alignFilename) (defined in GenomicMSA)	GenomicMSA
weight(const Alignment a, const MsaSignature sig) (defined in GenomicMSA)	GenomicMSA	static
weight(const Alignment a, const Alignment b, const MsaSignature *sig) (defined in GenomicMSA)	GenomicMSA	static
writeDot(AlignmentGraph const &g, string fname, MsaSignature const *superSig=NULL)	GenomicMSA
~GenomicMSA() (defined in GenomicMSA)	GenomicMSA	inline