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Augustus 3.4.0
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This is the complete list of members for MemSeqAccess, including all inherited members.
| chrLen (defined in RandSeqAccess) | RandSeqAccess | protected |
| extrinsicFeatures (defined in RandSeqAccess) | RandSeqAccess | protected |
| getChrLen(int idx, string chrName) (defined in RandSeqAccess) | RandSeqAccess | |
| getFeatures(string speciesname, string chrName, int start, int end, Strand strand) (defined in MemSeqAccess) | MemSeqAccess | virtual |
| getIdx(string speciesname) (defined in RandSeqAccess) | RandSeqAccess | |
| getMaxSnameLen() (defined in RandSeqAccess) | RandSeqAccess | |
| getNumSpecies() (defined in RandSeqAccess) | RandSeqAccess | inline |
| getSeq(string speciesname, string chrName, int start, int end, Strand strand) (defined in MemSeqAccess) | MemSeqAccess | virtual |
| getSeq(size_t speciesIdx, string chrName, int start, int end, Strand strand) (defined in RandSeqAccess) | RandSeqAccess | inline |
| getSname(size_t idx) (defined in RandSeqAccess) | RandSeqAccess | inline |
| MemSeqAccess(vector< string > s) (defined in MemSeqAccess) | MemSeqAccess | |
| numSpecies (defined in RandSeqAccess) | RandSeqAccess | protected |
| open() (defined in MemSeqAccess) | MemSeqAccess | inline |
| printStats() (defined in RandSeqAccess) | RandSeqAccess | |
| RandSeqAccess() (defined in RandSeqAccess) | RandSeqAccess | inlineprotected |
| setLength(int idx, string chrName, int len) (defined in RandSeqAccess) | RandSeqAccess | |
| setSpeciesNames(vector< string > speciesNames) (defined in RandSeqAccess) | RandSeqAccess | |
| speciesIndex (defined in RandSeqAccess) | RandSeqAccess | protected |
| speciesNames (defined in RandSeqAccess) | RandSeqAccess | protected |
| withEvidence(string speciesname) (defined in RandSeqAccess) | RandSeqAccess | inline |
| ~MemSeqAccess() (defined in MemSeqAccess) | MemSeqAccess | inline |
| ~RandSeqAccess() (defined in RandSeqAccess) | RandSeqAccess | inlinevirtual |
1.9.8