NAMGene Member List

This is the complete list of members for NAMGene, including all inherited members.

doViterbiPiecewise(SequenceFeatureCollection &sfc, AnnoSequence *annoseq, Strand strand, unsigned int &num_pieces)	NAMGene
getAllTranscripts() (defined in NAMGene)	NAMGene	inline
getEmissionProbability() (defined in NAMGene)	NAMGene
getForwardVariables()	NAMGene	inline
getPathEmiProb(StatePath *path, const char *dna, SequenceFeatureCollection &sfc, int countStart=-1, int countEnd=-1) (defined in NAMGene)	NAMGene
getPrepareModels(const char *dna, int len) (defined in NAMGene)	NAMGene	inline
getSampledPath(const char *dna, const char *seqname=NULL) (defined in NAMGene)	NAMGene
getStateIndex(StateType type) (defined in NAMGene)	NAMGene
getStateType(int i) (defined in NAMGene)	NAMGene
getTrainViterbiPath(const char *dna, SequenceFeatureCollection *sfc) (defined in NAMGene)	NAMGene
getViterbiPath(const char *dna, const char *seqname=NULL) (defined in NAMGene)	NAMGene
getViterbiVariables()	NAMGene	inline
NAMGene() (defined in NAMGene)	NAMGene
readModelProbabilities(int number=1) (defined in NAMGene)	NAMGene
setAllTranscripts(list< Transcript * > *tl) (defined in NAMGene)	NAMGene	inline
setNeedForwardTable(bool b) (defined in NAMGene)	NAMGene	inline
setPathAndProb(AnnoSequence *annoseq, FeatureCollection &extrinsicFeatures) (defined in NAMGene)	NAMGene
~NAMGene() (defined in NAMGene)	NAMGene	inline