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Augustus 3.4.0
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This is the complete list of members for NAMGene, including all inherited members.
| doViterbiPiecewise(SequenceFeatureCollection &sfc, AnnoSequence *annoseq, Strand strand, unsigned int &num_pieces) | NAMGene | |
| getAllTranscripts() (defined in NAMGene) | NAMGene | inline |
| getEmissionProbability() (defined in NAMGene) | NAMGene | |
| getForwardVariables() | NAMGene | inline |
| getPathEmiProb(StatePath *path, const char *dna, SequenceFeatureCollection &sfc, int countStart=-1, int countEnd=-1) (defined in NAMGene) | NAMGene | |
| getPrepareModels(const char *dna, int len) (defined in NAMGene) | NAMGene | inline |
| getSampledPath(const char *dna, const char *seqname=NULL) (defined in NAMGene) | NAMGene | |
| getStateIndex(StateType type) (defined in NAMGene) | NAMGene | |
| getStateType(int i) (defined in NAMGene) | NAMGene | |
| getTrainViterbiPath(const char *dna, SequenceFeatureCollection *sfc) (defined in NAMGene) | NAMGene | |
| getViterbiPath(const char *dna, const char *seqname=NULL) (defined in NAMGene) | NAMGene | |
| getViterbiVariables() | NAMGene | inline |
| NAMGene() (defined in NAMGene) | NAMGene | |
| readModelProbabilities(int number=1) (defined in NAMGene) | NAMGene | |
| setAllTranscripts(list< Transcript * > *tl) (defined in NAMGene) | NAMGene | inline |
| setNeedForwardTable(bool b) (defined in NAMGene) | NAMGene | inline |
| setPathAndProb(AnnoSequence *annoseq, FeatureCollection &extrinsicFeatures) (defined in NAMGene) | NAMGene | |
| ~NAMGene() (defined in NAMGene) | NAMGene | inline |
1.9.8