This is the complete list of members for OrthoGraph, including all inherited members.

all_orthogenes (defined in OrthoGraph)	OrthoGraph
buildGeneList(vector< list< Transcript * > * > &genelist) (defined in OrthoGraph)	OrthoGraph
createOrthoGenes(const GeneMSA *geneRange) (defined in OrthoGraph)	OrthoGraph
dualdecomp(list< OrthoExon > &all_orthoex, ExonEvo &evo, vector< list< Transcript * > * > &genelist, int gr_ID, int T, vector< double > &c) (defined in OrthoGraph)	OrthoGraph
filterGeneList(vector< list< Transcript * > * > &genelist, vector< int > &geneid) (defined in OrthoGraph)	OrthoGraph
geneLists (defined in OrthoGraph)	OrthoGraph
getStepSize(int r, double c, int t, int v, int numInconsistent, double current_dual, double best_primal, double best_dual) (defined in OrthoGraph)	OrthoGraph
globalPathSearch() (defined in OrthoGraph)	OrthoGraph
graphs (defined in OrthoGraph)	OrthoGraph
init(list< OrthoExon > &all_orthoex, ExonEvo &evo, int &numInconsistent) (defined in OrthoGraph)	OrthoGraph
linkToOEs(list< OrthoExon > &oes) (defined in OrthoGraph)	OrthoGraph
makeConsistent(list< OrthoExon > &all_orthoex, ExonEvo &evo) (defined in OrthoGraph)	OrthoGraph
numSpecies (defined in OrthoGraph)	OrthoGraph	static
OrthoGraph() (defined in OrthoGraph)	OrthoGraph	inline
outputGenes(vector< ofstream * > &filestreams, vector< int > &geneid) (defined in OrthoGraph)	OrthoGraph	inline
printGenelist(vector< ofstream * > &filestreams) (defined in OrthoGraph)	OrthoGraph
printOrthoGenes() (defined in OrthoGraph)	OrthoGraph
ptrs_to_alltranscripts (defined in OrthoGraph)	OrthoGraph
setStepRule(const char *r) (defined in OrthoGraph)	OrthoGraph	static
sfcs (defined in OrthoGraph)	OrthoGraph
step_rule (defined in OrthoGraph)	OrthoGraph	static
tree (defined in OrthoGraph)	OrthoGraph	static
treeMAPInf(list< OrthoExon > &all_orthoex, ExonEvo &evo, int &numInconsistent) (defined in OrthoGraph)	OrthoGraph
~OrthoGraph() (defined in OrthoGraph)	OrthoGraph	inline