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Augustus 3.4.0
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This is the complete list of members for PP::Block, including all inherited members.
| almostZero (defined in PP::Block) | PP::Block | static |
| backNormalize(double logscore, int from, int to, bool complement=false) const (defined in PP::Block) | PP::Block | inline |
| bestPartialLogScore(bool complement, int dna_offset, PartScoreType &) const (defined in PP::Block) | PP::Block | |
| Block(DistanceType, const vector< string > &, string) (defined in PP::Block) | PP::Block | |
| blockNumbInFile (defined in PP::Block) | PP::Block | |
| checkedSuffixScore(bool complement, int dna_offset, int block_offset) const (defined in PP::Block) | PP::Block | |
| distance (defined in PP::Block) | PP::Block | |
| getAllOwnDists() const (defined in PP::Block) | PP::Block | inline |
| getBackDist(int from, int to, bool complement=false) const (defined in PP::Block) | PP::Block | inline |
| getBackDist(int from=0) const (defined in PP::Block) | PP::Block | inline |
| getIntronFreq(int i, int frame) const (defined in PP::Block) | PP::Block | inline |
| getOwnDist(int from, int to, bool complement=false) const (defined in PP::Block) | PP::Block | inline |
| getOwnDist(int from=0) const (defined in PP::Block) | PP::Block | inline |
| getPartialThresh(bool complement, int from, int to) const (defined in PP::Block) | PP::Block | inline |
| getPartialThresh(bool complement, int from) const (defined in PP::Block) | PP::Block | inline |
| getPrefixThresh(bool complement, int i) const (defined in PP::Block) | PP::Block | inline |
| getSensThresh(double stddev, int from, int to) const (defined in PP::Block) | PP::Block | inline |
| getSensThresh(double stddev, int from=0) const (defined in PP::Block) | PP::Block | inline |
| getSpecThresh(double stddev, int from, int to) const (defined in PP::Block) | PP::Block | inline |
| getSpecThresh(double stddev, int from=0) const (defined in PP::Block) | PP::Block | inline |
| getSuffixThresh(bool complement, int i) const (defined in PP::Block) | PP::Block | inline |
| getThreshold() const (defined in PP::Block) | PP::Block | inline |
| hasIP() const (defined in PP::Block) | PP::Block | inline |
| id (defined in PP::Block) | PP::Block | |
| initConstants (defined in PP::Block) | PP::Block | friend |
| initDistributions() (defined in PP::Block) | PP::Block | |
| initThresholds() (defined in PP::Block) | PP::Block | |
| invalidScore (defined in PP::Block) | PP::Block | static |
| isAnchor() (defined in PP::Block) | PP::Block | inline |
| operator[](int columnNr) const (defined in PP::Block) | PP::Block | inline |
| ownNormalize(double logscore, int from, int to, bool complement=false) const (defined in PP::Block) | PP::Block | inline |
| reverse(DistanceType dist) (defined in PP::Block) | PP::Block | inline |
| scoreFromScratch(bool complement, int dna_offset, int block_offset, int len) const (defined in PP::Block) | PP::Block | |
| scoreFromScratch(bool complement, int dna_offset, int block_offset) const (defined in PP::Block) | PP::Block | inline |
| scoreFromScratch(bool complement, int dna_offset) const (defined in PP::Block) | PP::Block | inline |
| setIntronProfile(const vector< string > &) (defined in PP::Block) | PP::Block | |
| size() const (defined in PP::Block) | PP::Block | inline |
| ~Block() (defined in PP::Block) | PP::Block | inline |
1.9.8