This is the complete list of members for PP::Block, including all inherited members.

almostZero (defined in PP::Block)	PP::Block	static
backNormalize(double logscore, int from, int to, bool complement=false) const (defined in PP::Block)	PP::Block	inline
bestPartialLogScore(bool complement, int dna_offset, PartScoreType &) const (defined in PP::Block)	PP::Block
Block(DistanceType, const vector< string > &, string) (defined in PP::Block)	PP::Block
blockNumbInFile (defined in PP::Block)	PP::Block
checkedSuffixScore(bool complement, int dna_offset, int block_offset) const (defined in PP::Block)	PP::Block
distance (defined in PP::Block)	PP::Block
getAllOwnDists() const (defined in PP::Block)	PP::Block	inline
getBackDist(int from, int to, bool complement=false) const (defined in PP::Block)	PP::Block	inline
getBackDist(int from=0) const (defined in PP::Block)	PP::Block	inline
getIntronFreq(int i, int frame) const (defined in PP::Block)	PP::Block	inline
getOwnDist(int from, int to, bool complement=false) const (defined in PP::Block)	PP::Block	inline
getOwnDist(int from=0) const (defined in PP::Block)	PP::Block	inline
getPartialThresh(bool complement, int from, int to) const (defined in PP::Block)	PP::Block	inline
getPartialThresh(bool complement, int from) const (defined in PP::Block)	PP::Block	inline
getPrefixThresh(bool complement, int i) const (defined in PP::Block)	PP::Block	inline
getSensThresh(double stddev, int from, int to) const (defined in PP::Block)	PP::Block	inline
getSensThresh(double stddev, int from=0) const (defined in PP::Block)	PP::Block	inline
getSpecThresh(double stddev, int from, int to) const (defined in PP::Block)	PP::Block	inline
getSpecThresh(double stddev, int from=0) const (defined in PP::Block)	PP::Block	inline
getSuffixThresh(bool complement, int i) const (defined in PP::Block)	PP::Block	inline
getThreshold() const (defined in PP::Block)	PP::Block	inline
hasIP() const (defined in PP::Block)	PP::Block	inline
id (defined in PP::Block)	PP::Block
initConstants (defined in PP::Block)	PP::Block	friend
initDistributions() (defined in PP::Block)	PP::Block
initThresholds() (defined in PP::Block)	PP::Block
invalidScore (defined in PP::Block)	PP::Block	static
isAnchor() (defined in PP::Block)	PP::Block	inline
operator[](int columnNr) const (defined in PP::Block)	PP::Block	inline
ownNormalize(double logscore, int from, int to, bool complement=false) const (defined in PP::Block)	PP::Block	inline
reverse(DistanceType dist) (defined in PP::Block)	PP::Block	inline
scoreFromScratch(bool complement, int dna_offset, int block_offset, int len) const (defined in PP::Block)	PP::Block
scoreFromScratch(bool complement, int dna_offset, int block_offset) const (defined in PP::Block)	PP::Block	inline
scoreFromScratch(bool complement, int dna_offset) const (defined in PP::Block)	PP::Block	inline
setIntronProfile(const vector< string > &) (defined in PP::Block)	PP::Block
size() const (defined in PP::Block)	PP::Block	inline
~Block() (defined in PP::Block)	PP::Block	inline