PP::ExonScorer Member List
This is the complete list of members for PP::ExonScorer, including all inherited members.
| aa_count (defined in PP::ExonScorer) | PP::ExonScorer | protected |
| addMatches(int, int) (defined in PP::ExonScorer) | PP::ExonScorer | inlinevirtual |
| asNextPos(Position ppos) (defined in PP::ExonScorer) | PP::ExonScorer | inlineprotected |
| backward_mode (defined in PP::ExonScorer) | PP::ExonScorer | protected |
| beginOfFirstCodon (defined in PP::ExonScorer) | PP::ExonScorer | protected |
| blockCount() const (defined in PP::ExonScorer) | PP::ExonScorer | inlineprotected |
| blockScores (defined in PP::ExonScorer) | PP::ExonScorer | protected |
| blockSize(int b) const (defined in PP::ExonScorer) | PP::ExonScorer | inlineprotected |
| complement (defined in PP::ExonScorer) | PP::ExonScorer | protected |
| currentHSColl (defined in PP::ExonScorer) | PP::ExonScorer | protected |
| endOfLastCodon (defined in PP::ExonScorer) | PP::ExonScorer | protected |
| endStateOffset (defined in PP::ExonScorer) | PP::ExonScorer | protected |
| exceedsBlock(Position ppos) const (defined in PP::ExonScorer) | PP::ExonScorer | inlineprotected |
| ExonScorer(SubstateModel &model, int endOfBioExon, StateType type) (defined in PP::ExonScorer) | PP::ExonScorer | inlineprotected |
| exportSubstates(ViterbiSubmapType &) (defined in PP::ExonScorer) | PP::ExonScorer | inlinevirtual |
| getBlock(int b) const (defined in PP::ExonScorer) | PP::ExonScorer | inlineprotected |
| getPredSubstate() (defined in PP::ExonScorer) | PP::ExonScorer | inlinevirtual |
| hasNewMax() (defined in PP::ExonScorer) | PP::ExonScorer | inlinevirtual |
| interBlockDist(int b) const (defined in PP::ExonScorer) | PP::ExonScorer | inlineprotected |
| interBlockFullDist(int b) const (defined in PP::ExonScorer) | PP::ExonScorer | inlineprotected |
| interBlockFullRange(int b) const (defined in PP::ExonScorer) | PP::ExonScorer | inlineprotected |
| interBlockRange(int b) const (defined in PP::ExonScorer) | PP::ExonScorer | inlineprotected |
| is_active (defined in PP::ExonScorer) | PP::ExonScorer | protected |
| mdl (defined in PP::ExonScorer) | PP::ExonScorer | protected |
| newFirstCodon(int beginOfBioExon) (defined in PP::ExonScorer) | PP::ExonScorer | inline |
| postProcessing(const Double &maxProb)=0 (defined in PP::ExonScorer) | PP::ExonScorer | pure virtual |
| score(ViterbiColumnType &col, int predState, const Double &transEmiProb) (defined in PP::ExonScorer) | PP::ExonScorer | inline |
| scoreFirst(ViterbiColumnType &col, int predState, const Double &transEmiProb)=0 (defined in PP::ExonScorer) | PP::ExonScorer | pure virtual |
| scoreFunPtr (defined in PP::ExonScorer) | PP::ExonScorer | protected |
| scoreInternal(ViterbiColumnType &col, int predState, const Double &transEmiProb)=0 (defined in PP::ExonScorer) | PP::ExonScorer | pure virtual |
| validSize() (defined in PP::ExonScorer) | PP::ExonScorer | inline |
| ~ExonScorer() (defined in PP::ExonScorer) | PP::ExonScorer | inlinevirtual |
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