PhyloTree Member List

This is the complete list of members for PhyloTree, including all inherited members.

collapse(Treenode *node, Evo *evo) (defined in PhyloTree)	PhyloTree
drop(std::string species) (defined in PhyloTree)	PhyloTree
drop(Treenode *node, Evo *evo) (defined in PhyloTree)	PhyloTree
fitch(vector< int > &labels, int states=64) (defined in PhyloTree)	PhyloTree
getBranchLengths(std::vector< double > &branchset) const (defined in PhyloTree)	PhyloTree
getDiversity() (defined in PhyloTree)	PhyloTree
getLeaf(std::string species) const (defined in PhyloTree)	PhyloTree
getSpeciesNames(std::vector< std::string > &speciesnames) (defined in PhyloTree)	PhyloTree
MAP(std::vector< int > &labels, std::vector< double > &weights, Evo *evo, bool fixLeafLabels=false) (defined in PhyloTree)	PhyloTree
MAPbacktrack(std::vector< int > &labels, Treenode *root, int bestAssign, bool fixLeafLabels) (defined in PhyloTree)	PhyloTree
numSpecies() (defined in PhyloTree)	PhyloTree	inline
phylo_factor (defined in PhyloTree)	PhyloTree	static
PhyloTree(std::string filename) (defined in PhyloTree)	PhyloTree
PhyloTree(const std::vector< std::string > &speciesnames, double b=1) (defined in PhyloTree)	PhyloTree
PhyloTree(const PhyloTree &other) (defined in PhyloTree)	PhyloTree
printNewick(std::string filename) const (defined in PhyloTree)	PhyloTree
printRecursionTable() const (defined in PhyloTree)	PhyloTree
printTree() const (defined in PhyloTree)	PhyloTree
prune(bit_vector &bv, Evo *evo) (defined in PhyloTree)	PhyloTree
pruningAlgor(std::string labelpattern, Evo *evo, int u=0) (defined in PhyloTree)	PhyloTree
pruningAlgor(std::vector< int > &tuple, Evo *evo, int u=0) (defined in PhyloTree)	PhyloTree
recursiveNWK(std::ofstream &file, Treenode *node) const (defined in PhyloTree)	PhyloTree
scaleTree(double factor) (defined in PhyloTree)	PhyloTree
~PhyloTree() (defined in PhyloTree)	PhyloTree