SS::SimilarityScore Member List

This is the complete list of members for SS::SimilarityScore, including all inherited members.

alignments (defined in SS::SimilarityScore)	SS::SimilarityScore
alignmentsReadable (defined in SS::SimilarityScore)	SS::SimilarityScore
avgArgMaxProb() (defined in SS::SimilarityScore)	SS::SimilarityScore
backtrackingDB(int number_Alignments) (defined in SS::SimilarityScore)	SS::SimilarityScore
fillSimilarityMatrix() (defined in SS::SimilarityScore)	SS::SimilarityScore
printAlignment() (defined in SS::SimilarityScore)	SS::SimilarityScore
printAlignmentDB() (defined in SS::SimilarityScore)	SS::SimilarityScore
printBlockPos() (defined in SS::SimilarityScore)	SS::SimilarityScore
printInterBlock() (defined in SS::SimilarityScore)	SS::SimilarityScore
printSimilarityMatrix() (defined in SS::SimilarityScore)	SS::SimilarityScore
readFiles(const char *seqFileName, const char *profileFileName) (defined in SS::SimilarityScore)	SS::SimilarityScore
score() (defined in SS::SimilarityScore)	SS::SimilarityScore
SimilarityMatrix_empty() (defined in SS::SimilarityScore)	SS::SimilarityScore
SimilarityScore(double g, double b, double g_i, double iw1, double iw2, double e_i, double e_n) (defined in SS::SimilarityScore)	SS::SimilarityScore
~SimilarityScore() (defined in SS::SimilarityScore)	SS::SimilarityScore