AltGene Class Reference

Public Member Functions
bool	operator< (const AltGene &other) const
void	addGene (Transcript *tx)
bool	overlaps (Transcript *tx)
void	shiftCoordinates (long d)
void	sortTranscripts (int numkeep=-1)
void	deleteSuboptimalTranscripts (bool uniqueCDS)
long	minTransBegin ()
long	maxTransEnd ()
bool	isCoding ()

Public Attributes
list< Transcript * >	transcripts
long	mincodstart
long	maxcodend
Strand	strand
string	id
string	seqname
float	apostprob
bool	hasProbs

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The documentation for this class was generated from the following files:

• include/gene.hh
• src/gene.cc