Feature Class Reference

Hints on the gene structure. More...

#include <hints.hh>

Public Member Functions
	Feature (int anfang, int ende, FeatureType typ, Strand strang, int leserahmen, string equelle)
double	exonpartMalus (int len)
double	distance_faded_bonus (int pos)
bool	compatibleWith (Feature &other)
bool	weakerThan (Feature &other, bool &strictly)
double	conformance ()
int	length ()
void	shiftCoordinates (int start, int end, bool rc=false)
void	setFrame (string f)
void	setStrand (string s)

Static Public Member Functions
static FeatureType	getFeatureType (string typestring)
static FeatureType	getFeatureType (int typeint)

Public Attributes
string	seqname
string	source
string	feature
string	groupname
int	priority
long	start
long	end
double	score
double	bonus
double	malus
Strand	strand
int	frame
string	attributes
int	gradeclass
string	esource
FeatureType	type
bool	active
bool	discard
Feature *	next
float	numContradicting
int	numSupporting
int	mult

Static Public Attributes
static long	offset = 0

Detailed Description

Hints on the gene structure.

Author

Mario Stanke

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The documentation for this class was generated from the following files:

• include/hints.hh
• src/hints.cc