Hints on the gene structure.
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#include <hints.hh>
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| Feature (int anfang, int ende, FeatureType typ, Strand strang, int leserahmen, string equelle) |
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double | exonpartMalus (int len) |
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double | distance_faded_bonus (int pos) |
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bool | compatibleWith (Feature &other) |
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bool | weakerThan (Feature &other, bool &strictly) |
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double | conformance () |
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int | length () |
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void | shiftCoordinates (int start, int end, bool rc=false) |
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void | setFrame (string f) |
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void | setStrand (string s) |
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static FeatureType | getFeatureType (string typestring) |
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static FeatureType | getFeatureType (int typeint) |
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string | seqname |
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string | source |
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string | feature |
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string | groupname |
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int | priority |
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long | start |
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long | end |
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double | score |
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double | bonus |
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double | malus |
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Strand | strand |
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int | frame |
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string | attributes |
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int | gradeclass |
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string | esource |
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FeatureType | type |
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bool | active |
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bool | discard |
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Feature * | next |
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float | numContradicting |
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int | numSupporting |
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int | mult |
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Hints on the gene structure.
- Author
- Mario Stanke
The documentation for this class was generated from the following files:
