|
Augustus 3.4.0
|
This is the complete list of members for FeatureCollection, including all inherited members.
| esource(string skey) (defined in FeatureCollection) | FeatureCollection | |
| FeatureCollection() (defined in FeatureCollection) | FeatureCollection | inline |
| FeatureCollection(const FeatureCollection &other) (defined in FeatureCollection) | FeatureCollection | |
| get1group1gene(string skey) (defined in FeatureCollection) | FeatureCollection | inline |
| getIndividualLiability(string skey) (defined in FeatureCollection) | FeatureCollection | inline |
| getNumCommonSeqs(AnnoSequence *annoseq) (defined in FeatureCollection) | FeatureCollection | |
| getNumSeqsWithInfo() (defined in FeatureCollection) | FeatureCollection | inline |
| getSequenceFeatureCollection(const char *seqname) (defined in FeatureCollection) | FeatureCollection | inline |
| getSequenceFeatureCollection(string seqname) (defined in FeatureCollection) | FeatureCollection | inline |
| hasHintsFile (defined in FeatureCollection) | FeatureCollection | |
| isInCollections(string seqname) (defined in FeatureCollection) | FeatureCollection | inline |
| localMalus(FeatureType type) (defined in FeatureCollection) | FeatureCollection | inline |
| localPartMalus(FeatureType type, int len, Double bonus, int nindep) (defined in FeatureCollection) | FeatureCollection | |
| malus(FeatureType type) (defined in FeatureCollection) | FeatureCollection | inline |
| offset (defined in FeatureCollection) | FeatureCollection | |
| partMalus(FeatureType type, int len) (defined in FeatureCollection) | FeatureCollection | |
| printAccuracyForSequenceSet(const AnnoSequence *annoseqs, bool cleanRedundancies=true) (defined in FeatureCollection) | FeatureCollection | |
| printAccuracyForSequenceSetOld(const AnnoSequence *annoseqs, bool cleanRedundancies=true) (defined in FeatureCollection) | FeatureCollection | |
| readExtrinsicCFGFile() (defined in FeatureCollection) | FeatureCollection | |
| readGFFFile(const char *filename) (defined in FeatureCollection) | FeatureCollection | |
| readSourceRelatedCFG(istream &datei) (defined in FeatureCollection) | FeatureCollection | |
| readTypeInfo(istream &datei) (defined in FeatureCollection) | FeatureCollection | |
| setBonusMalus(Feature &f) (defined in FeatureCollection) | FeatureCollection | |
| skeyExists(string skey) (defined in FeatureCollection) | FeatureCollection | |
| ~FeatureCollection() (defined in FeatureCollection) | FeatureCollection | inline |
1.9.8