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| FeatureCollection (const FeatureCollection &other) |
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SequenceFeatureCollection & | getSequenceFeatureCollection (const char *seqname) |
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SequenceFeatureCollection * | getSequenceFeatureCollection (string seqname) |
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bool | isInCollections (string seqname) |
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void | readGFFFile (const char *filename) |
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void | setBonusMalus (Feature &f) |
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void | readExtrinsicCFGFile () |
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void | readSourceRelatedCFG (istream &datei) |
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void | readTypeInfo (istream &datei) |
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int | getNumSeqsWithInfo () |
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int | getNumCommonSeqs (AnnoSequence *annoseq) |
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void | printAccuracyForSequenceSet (const AnnoSequence *annoseqs, bool cleanRedundancies=true) |
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void | printAccuracyForSequenceSetOld (const AnnoSequence *annoseqs, bool cleanRedundancies=true) |
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bool | skeyExists (string skey) |
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int | esource (string skey) |
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bool | getIndividualLiability (string skey) |
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bool | get1group1gene (string skey) |
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double | malus (FeatureType type) |
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double | localMalus (FeatureType type) |
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double | partMalus (FeatureType type, int len) |
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double | localPartMalus (FeatureType type, int len, Double bonus, int nindep) |
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bool | hasHintsFile |
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int | offset |
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The documentation for this class was generated from the following files:
