Augustus 3.4.0
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This is the complete list of members for HintGroup, including all inherited members.
addCopyNumber(int n) (defined in HintGroup) | HintGroup | inline |
addFeature(Feature *hint) (defined in HintGroup) | HintGroup | |
addIncompGroup(HintGroup *otherGroup) (defined in HintGroup) | HintGroup | |
addStrongerGroup(HintGroup *otherGroup) (defined in HintGroup) | HintGroup | |
canCauseAltSplice() (defined in HintGroup) | HintGroup | |
compatibleWith(HintGroup &other, Feature *&rascal1, Feature *&rascal2, bool &weakerThan) (defined in HintGroup) | HintGroup | |
getBegin() const (defined in HintGroup) | HintGroup | inline |
getCopyNumber() const (defined in HintGroup) | HintGroup | inline |
getEnd() const (defined in HintGroup) | HintGroup | inline |
getGeneBegin() const (defined in HintGroup) | HintGroup | inline |
getGeneEnd() const (defined in HintGroup) | HintGroup | inline |
getHints() (defined in HintGroup) | HintGroup | inline |
getIncompGroups() (defined in HintGroup) | HintGroup | inline |
getName() const (defined in HintGroup) | HintGroup | inline |
getPriority() const (defined in HintGroup) | HintGroup | inline |
getSize() const (defined in HintGroup) | HintGroup | inline |
getSource() const (defined in HintGroup) | HintGroup | inline |
getStrongerGroups() (defined in HintGroup) | HintGroup | inline |
HintGroup() (defined in HintGroup) | HintGroup | inline |
isTrashy() (defined in HintGroup) | HintGroup | |
nestedGenePossible(HintGroup &other) (defined in HintGroup) | HintGroup | |
operator< (defined in HintGroup) | HintGroup | friend |
operator== (defined in HintGroup) | HintGroup | friend |
print(ostream &out, bool withHints=false) (defined in HintGroup) | HintGroup | |
setActiveFlag(bool active) (defined in HintGroup) | HintGroup | |
setDiscardFlag(bool discard) (defined in HintGroup) | HintGroup | |
sortFeatures() (defined in HintGroup) | HintGroup | |
sortIncompGroup() (defined in HintGroup) | HintGroup | inline |
updateFeatureConformance(HintGroup &other) (defined in HintGroup) | HintGroup | |
~HintGroup() (defined in HintGroup) | HintGroup | inline |