#include <hints.hh>

Public Member Functions
string	getName () const

int	getPriority () const

int	getBegin () const

int	getEnd () const

int	getGeneBegin () const

int	getGeneEnd () const

int	getCopyNumber () const

void	addCopyNumber (int n)

int	getSize () const

string	getSource () const

list< HintGroup * > *	getIncompGroups ()

list< HintGroup * > *	getStrongerGroups ()

list< Feature * > *	getHints ()

void	print (ostream &out, bool withHints=false)

void	sortFeatures ()

void	addFeature (Feature *hint)

bool	compatibleWith (HintGroup &other, Feature &rascal1, Feature &rascal2, bool &weakerThan)

void	updateFeatureConformance (HintGroup &other)

bool	nestedGenePossible (HintGroup &other)

bool	isTrashy ()

bool	canCauseAltSplice ()

void	setActiveFlag (bool active)

void	setDiscardFlag (bool discard)

void	addIncompGroup (HintGroup *otherGroup)

void	addStrongerGroup (HintGroup *otherGroup)

void	sortIncompGroup ()

Friends
bool	operator< (const HintGroup &g1, const HintGroup &g2)

bool	operator== (const HintGroup &g1, const HintGroup &g2)

Detailed Description

Hints that are known to belong to the same gene, for example, because they come from the same mRNA, form a group.

The documentation for this class was generated from the following files:

Public Member Functions