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Augustus 3.4.0
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This is the complete list of members for Motif, including all inherited members.
| addSequence(const char *seq, int weight=1, bool reverse=false) (defined in Motif) | Motif | |
| clearCounts() (defined in Motif) | Motif | |
| getProbThreshold(double q, int numSamples=10000) (defined in Motif) | Motif | |
| getSampleDNA() (defined in Motif) | Motif | |
| k (defined in Motif) | Motif | |
| makeProbs() (defined in Motif) | Motif | |
| Motif() (defined in Motif) | Motif | inline |
| Motif(int length, int memory=0, int pseudocount=1, int neighbors=0) (defined in Motif) | Motif | |
| n (defined in Motif) | Motif | |
| neighbors (defined in Motif) | Motif | |
| numSeqs (defined in Motif) | Motif | |
| operator=(const Motif &other) (defined in Motif) | Motif | |
| printProbs() (defined in Motif) | Motif | |
| pseudocount (defined in Motif) | Motif | |
| read(ifstream &in) (defined in Motif) | Motif | |
| seqProb(const char *seq, bool reverse=false, bool complement=false) (defined in Motif) | Motif | |
| write(ofstream &out) (defined in Motif) | Motif | |
| ~Motif() (defined in Motif) | Motif |
1.9.8