Motif Member List

This is the complete list of members for Motif, including all inherited members.

addSequence(const char *seq, int weight=1, bool reverse=false) (defined in Motif)	Motif
clearCounts() (defined in Motif)	Motif
getProbThreshold(double q, int numSamples=10000) (defined in Motif)	Motif
getSampleDNA() (defined in Motif)	Motif
k (defined in Motif)	Motif
makeProbs() (defined in Motif)	Motif
Motif() (defined in Motif)	Motif	inline
Motif(int length, int memory=0, int pseudocount=1, int neighbors=0) (defined in Motif)	Motif
n (defined in Motif)	Motif
neighbors (defined in Motif)	Motif
numSeqs (defined in Motif)	Motif
operator=(const Motif &other) (defined in Motif)	Motif
printProbs() (defined in Motif)	Motif
pseudocount (defined in Motif)	Motif
read(ifstream &in) (defined in Motif)	Motif
seqProb(const char *seq, bool reverse=false, bool complement=false) (defined in Motif)	Motif
write(ofstream &out) (defined in Motif)	Motif
~Motif() (defined in Motif)	Motif