#include <motif.hh>
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Motif & | operator= (const Motif &other) |
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| Motif (int length, int memory=0, int pseudocount=1, int neighbors=0) |
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void | addSequence (const char *seq, int weight=1, bool reverse=false) |
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void | makeProbs () |
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void | printProbs () |
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Double | seqProb (const char *seq, bool reverse=false, bool complement=false) |
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void | write (ofstream &out) |
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void | read (ifstream &in) |
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void | clearCounts () |
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char * | getSampleDNA () |
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Double | getProbThreshold (double q, int numSamples=10000) |
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int | n |
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int | k |
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int | numSeqs |
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int | neighbors |
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int | pseudocount |
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The documentation for this class was generated from the following files:
