MsaSignature Class Reference

MsaSignature is a summary of the seqId/strand combinations of the alignment. More...

#include <alignment.hh>

Public Member Functions
string	sigstr () const
bool	operator< (const MsaSignature &other) const
bool	fits (const Alignment &a, size_t s) const

Public Attributes
vector< string >	sigrows
int	numAli
int	sumAliLen
int	sumCumFragLen
int	depth
int	color

Static Public Attributes
static int	maxSigStrLen = 0

Detailed Description

MsaSignature is a summary of the seqId/strand combinations of the alignment.

Author

Mario Stanke

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The documentation for this class was generated from the following files:

• include/alignment.hh
• src/alignment.cc