OpenReadingFrame Class Reference

Open Reading Frame (ORF), part of the exon model. More...

#include <exonmodel.hh>

Public Member Functions
	OpenReadingFrame (const char *dna, int _max_exon_length, int _n)
int	leftmostExonBegin (int frame, int base, bool forward)

Detailed Description

Open Reading Frame (ORF), part of the exon model.

The reading frame of an exon is the position of the nucleotide following the exon in its codon starting counting at 0:
forward strand:
*** | *** index 0
*** * | ** *** index 1
*** ** | * *** index 2
reverse strand:
*** | *** index 2
*** * | ** *** index 1
*** ** | * *** index 0

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The documentation for this class was generated from the following files:

• include/exonmodel.hh
• src/exonmodel.cc