Augustus 3.4.0
Loading...
Searching...
No Matches
PP::BlockScoreType Member List

This is the complete list of members for PP::BlockScoreType, including all inherited members.

addBlocksUntil(bool complement, int newbase, map< int, Double > *result=NULL) (defined in PP::BlockScoreType)PP::BlockScoreType
aligned_type typedef (defined in PP::BlockScoreType)PP::BlockScoreType
array_type typedef (defined in PP::BlockScoreType)PP::BlockScoreType
begin() const (defined in PP::BlockScoreType)PP::BlockScoreTypeinline
BlockScoreType(const Block &block) (defined in PP::BlockScoreType)PP::BlockScoreTypeinline
count() const (defined in PP::BlockScoreType)PP::BlockScoreTypeinline
end() const (defined in PP::BlockScoreType)PP::BlockScoreTypeinline
front() (defined in PP::BlockScoreType)PP::BlockScoreTypeinline
get(int dna_offset, int block_offset, int len) const (defined in PP::BlockScoreType)PP::BlockScoreTypeinline
get(int dna_offset, int block_offset) const (defined in PP::BlockScoreType)PP::BlockScoreTypeinline
get(int dna_offset) const (defined in PP::BlockScoreType)PP::BlockScoreTypeinline
getAlignedScores(int x) const (defined in PP::BlockScoreType)PP::BlockScoreTypeinline
init(int newoffset=0) (defined in PP::BlockScoreType)PP::BlockScoreTypeinline
pop_front() (defined in PP::BlockScoreType)PP::BlockScoreTypeinline
prefixThresh(bool complement, int i) const (defined in PP::BlockScoreType)PP::BlockScoreTypeinline
removeBlocksUntil(int newbase) (defined in PP::BlockScoreType)PP::BlockScoreTypeinline
savedHits(int f) const (defined in PP::BlockScoreType)PP::BlockScoreTypeinline
savedScore(int offset) (defined in PP::BlockScoreType)PP::BlockScoreTypeinline
size() const (defined in PP::BlockScoreType)PP::BlockScoreTypeinline
suffixThresh(bool complement, int i) const (defined in PP::BlockScoreType)PP::BlockScoreTypeinline