Augustus 3.4.0
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This is the complete list of members for PP::BlockScoreType, including all inherited members.
addBlocksUntil(bool complement, int newbase, map< int, Double > *result=NULL) (defined in PP::BlockScoreType) | PP::BlockScoreType | |
aligned_type typedef (defined in PP::BlockScoreType) | PP::BlockScoreType | |
array_type typedef (defined in PP::BlockScoreType) | PP::BlockScoreType | |
begin() const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
BlockScoreType(const Block &block) (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
count() const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
end() const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
front() (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
get(int dna_offset, int block_offset, int len) const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
get(int dna_offset, int block_offset) const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
get(int dna_offset) const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
getAlignedScores(int x) const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
init(int newoffset=0) (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
pop_front() (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
prefixThresh(bool complement, int i) const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
removeBlocksUntil(int newbase) (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
savedHits(int f) const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
savedScore(int offset) (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
size() const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
suffixThresh(bool complement, int i) const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |