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Augustus 3.4.0
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This is the complete list of members for PP::BlockScoreType, including all inherited members.
| addBlocksUntil(bool complement, int newbase, map< int, Double > *result=NULL) (defined in PP::BlockScoreType) | PP::BlockScoreType | |
| aligned_type typedef (defined in PP::BlockScoreType) | PP::BlockScoreType | |
| array_type typedef (defined in PP::BlockScoreType) | PP::BlockScoreType | |
| begin() const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
| BlockScoreType(const Block &block) (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
| count() const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
| end() const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
| front() (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
| get(int dna_offset, int block_offset, int len) const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
| get(int dna_offset, int block_offset) const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
| get(int dna_offset) const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
| getAlignedScores(int x) const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
| init(int newoffset=0) (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
| pop_front() (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
| prefixThresh(bool complement, int i) const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
| removeBlocksUntil(int newbase) (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
| savedHits(int f) const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
| savedScore(int offset) (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
| size() const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |
| suffixThresh(bool complement, int i) const (defined in PP::BlockScoreType) | PP::BlockScoreType | inline |