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typedef vector< Double > | aligned_type |
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typedef deque< aligned_type > | array_type |
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| BlockScoreType (const Block &block) |
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bool | addBlocksUntil (bool complement, int newbase, map< int, Double > *result=NULL) |
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void | removeBlocksUntil (int newbase) |
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Double | savedScore (int offset) |
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const map< int, Double > & | savedHits (int f) const |
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void | init (int newoffset=0) |
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void | pop_front () |
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Double | front () |
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const aligned_type & | getAlignedScores (int x) const |
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Double | get (int dna_offset, int block_offset, int len) const |
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Double | get (int dna_offset, int block_offset) const |
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Double | get (int dna_offset) const |
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const int & | begin () const |
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int | count () const |
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int | end () const |
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int | size () const |
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Double | prefixThresh (bool complement, int i) const |
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Double | suffixThresh (bool complement, int i) const |
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The documentation for this class was generated from the following files:
