PP::IntronProfile Class Reference

intron profile for a block and the inter-block section before the block More...

#include <pp_profile.hh>

Public Member Functions
	IntronProfile (const vector< string > &lines)
	Read an intron profile for one block and the inter-block section before the block.
int	getIntraFreq (unsigned c, unsigned f) const
int	getInterFreq (unsigned n) const
int	get_numSeq () const

Detailed Description

intron profile for a block and the inter-block section before the block

Author

: Lars Gabriel

Constructor & Destructor Documentation

IntronProfile()

IntronProfile::IntronProfile

(

const vector< string > &

lines

)

Read an intron profile for one block and the inter-block section before the block.

Parameters

[in]

lines

A "[Intron Profile]" section of a block profile file

Member Function Documentation

get_numSeq()

int PP::IntronProfile::get_numSeq ( ) const

inline

Returns

The number of protein sequences used for the intron profile

getInterFreq()

int PP::IntronProfile::getInterFreq ( unsigned  n ) const

inline

Parameters

[in]

n

A count in {0,1,2...}

Returns

The frequency that n introns occur in the inter-block section

getIntraFreq()

int PP::IntronProfile::getIntraFreq ( unsigned  c, unsigned  f  ) const

inline

Parameters

[in]	c	A block column
[in]	f	A frame in {0,1,2}

Returns

The frequency of introns after block column c and f residual nucleotides

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The documentation for this class was generated from the following files:

• include/pp_profile.hh
• src/pp_profile.cc