PP::MultiTargetExonScorer Member List

This is the complete list of members for PP::MultiTargetExonScorer, including all inherited members.

aa_count (defined in PP::ExonScorer)	PP::ExonScorer	protected
addMatches(int, int) (defined in PP::ExonScorer)	PP::ExonScorer	inlinevirtual
asNextPos(Position ppos) (defined in PP::ExonScorer)	PP::ExonScorer	inlineprotected
backward_mode (defined in PP::ExonScorer)	PP::ExonScorer	protected
beginOfFirstCodon (defined in PP::ExonScorer)	PP::ExonScorer	protected
blockCount() const (defined in PP::ExonScorer)	PP::ExonScorer	inlineprotected
blockScores (defined in PP::ExonScorer)	PP::ExonScorer	protected
blockSize(int b) const (defined in PP::ExonScorer)	PP::ExonScorer	inlineprotected
complement (defined in PP::ExonScorer)	PP::ExonScorer	protected
currentHSColl (defined in PP::ExonScorer)	PP::ExonScorer	protected
endOfLastCodon (defined in PP::ExonScorer)	PP::ExonScorer	protected
endStateOffset (defined in PP::ExonScorer)	PP::ExonScorer	protected
exceedsBlock(Position ppos) const (defined in PP::ExonScorer)	PP::ExonScorer	inlineprotected
ExonScorer(SubstateModel &model, int endOfBioExon, StateType type) (defined in PP::ExonScorer)	PP::ExonScorer	inlineprotected
exportSubstates(ViterbiSubmapType &) (defined in PP::ExonScorer)	PP::ExonScorer	inlinevirtual
getBlock(int b) const (defined in PP::ExonScorer)	PP::ExonScorer	inlineprotected
getPredSubstate() (defined in PP::ExonScorer)	PP::ExonScorer	inlinevirtual
hasNewMax() (defined in PP::ExonScorer)	PP::ExonScorer	inlinevirtual
interBlockDist(int b) const (defined in PP::ExonScorer)	PP::ExonScorer	inlineprotected
interBlockFullDist(int b) const (defined in PP::ExonScorer)	PP::ExonScorer	inlineprotected
interBlockFullRange(int b) const (defined in PP::ExonScorer)	PP::ExonScorer	inlineprotected
interBlockRange(int b) const (defined in PP::ExonScorer)	PP::ExonScorer	inlineprotected
is_active (defined in PP::ExonScorer)	PP::ExonScorer	protected
mdl (defined in PP::ExonScorer)	PP::ExonScorer	protected
MultiTargetExonScorer(SubstateModel &model, ViterbiSubmapType &, StateType etype, int endOfBioExon) (defined in PP::MultiTargetExonScorer)	PP::MultiTargetExonScorer
newFirstCodon(int beginOfBioExon) (defined in PP::ExonScorer)	PP::ExonScorer	inline
score(ViterbiColumnType &col, int predState, const Double &transEmiProb) (defined in PP::ExonScorer)	PP::ExonScorer	inline
scoreFunPtr (defined in PP::ExonScorer)	PP::ExonScorer	protected
validSize() (defined in PP::ExonScorer)	PP::ExonScorer	inline
~ExonScorer() (defined in PP::ExonScorer)	PP::ExonScorer	inlinevirtual