Inheritance diagram for PP::MultiTargetExonScorer:
Public Member Functions | |
| MultiTargetExonScorer (SubstateModel &model, ViterbiSubmapType &, StateType etype, int endOfBioExon) | |
 Public Member Functions inherited from PP::ExonScorer | |
| void | newFirstCodon (int beginOfBioExon) |
| void | score (ViterbiColumnType &col, int predState, const Double &transEmiProb) |
| virtual void | exportSubstates (ViterbiSubmapType &) |
| virtual SubstateId | getPredSubstate () |
| virtual bool | hasNewMax () |
| virtual void | addMatches (int, int) |
| bool | validSize () |
Additional Inherited Members | |
| Protected Member Functions inherited from PP::ExonScorer | |
| ExonScorer (SubstateModel &model, int endOfBioExon, StateType type) | |
| int | blockCount () const |
| int | blockSize (int b) const |
| const Block & | getBlock (int b) const |
| bool | exceedsBlock (Position ppos) const |
| DistanceType | interBlockDist (int b) const |
| DistanceType | interBlockFullDist (int b) const |
| Range | interBlockRange (int b) const |
| Range | interBlockFullRange (int b) const |
| Position | asNextPos (Position ppos) |
| Protected Attributes inherited from PP::ExonScorer | |
| void(ExonScorer::* | scoreFunPtr )(ViterbiColumnType &, int predState, const Double &) |
| bool | complement |
| SubstateModel & | mdl |
| vector< BlockScoreType > & | blockScores |
| int | aa_count |
| int | beginOfFirstCodon |
| int | endOfLastCodon |
| HitSequenceCollection * | currentHSColl |
| bool | is_active |
| int | endStateOffset |
| bool | backward_mode |
The documentation for this class was generated from the following files:
- include/pp_scoring.hh
- src/pp_scoring.cc
