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Augustus 3.4.0
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This is the complete list of members for Parsimony, including all inherited members.
| addBranchLength(double b) (defined in Parsimony) | Parsimony | inlinevirtual |
| allLogPs (defined in Evo) | Evo | protected |
| allPs (defined in Evo) | Evo | protected |
| allQs (defined in Evo) | Evo | protected |
| computeLogPmatrices() (defined in Parsimony) | Parsimony | virtual |
| Evo(int s) (defined in Evo) | Evo | inline |
| expQt(double t, gsl_vector *lambda, gsl_matrix *U, gsl_matrix *Uinv) (defined in Evo) | Evo | |
| findClosestIndex(vector< double > &v, double val) (defined in Evo) | Evo | protected |
| getLogPi(int i) const (defined in Evo) | Evo | inline |
| getNumStates() (defined in Evo) | Evo | inline |
| getPi(int i) const (defined in Evo) | Evo | inline |
| getRateMatrices() (defined in Evo) | Evo | inlinevirtual |
| getSubMatrixLogP(int u, double t) (defined in Evo) | Evo | |
| getSubMatrixP(int u, double t) (defined in Evo) | Evo | |
| getSubMatrixQ(int u) (defined in Evo) | Evo | inline |
| m (defined in Evo) | Evo | protected |
| Parsimony() (defined in Parsimony) | Parsimony | inline |
| pi (defined in Evo) | Evo | protected |
| printBranchLengths() (defined in Evo) | Evo | |
| setBranchLengths(vector< double > b, int m=-1) (defined in Evo) | Evo | |
| states (defined in Evo) | Evo | protected |
| times (defined in Evo) | Evo | protected |
| ~Evo() (defined in Evo) | Evo | virtual |
1.9.8