Inheritance diagram for Parsimony:

Public Member Functions
void	computeLogPmatrices ()

void	addBranchLength (double b)

Public Member Functions inherited from Evo
	Evo (int s)

int	getNumStates ()

void	setBranchLengths (vector< double > b, int m=-1)

void	printBranchLengths ()

virtual void	getRateMatrices ()

double	getPi (int i) const

double	getLogPi (int i) const

gsl_matrix *	getSubMatrixQ (int u)

gsl_matrix *	getSubMatrixP (int u, double t)

gsl_matrix *	getSubMatrixLogP (int u, double t)

gsl_matrix *	expQt (double t, gsl_vector lambda, gsl_matrix U, gsl_matrix *Uinv)

Additional Inherited Members
Protected Member Functions inherited from Evo
int	findClosestIndex (vector< double > &v, double val)

Protected Attributes inherited from Evo
const int	states

int	m

double *	pi

vector< double >	times

vector< gsl_matrix * >	allQs

Matrix< gsl_matrix * >	allPs

Matrix< gsl_matrix * >	allLogPs

Member Function Documentation

◆ addBranchLength()

void Parsimony::addBranchLength ( double b )

inlinevirtual

Implements Evo.

void Parsimony::computeLogPmatrices ( )

virtual

Implements Evo.

The documentation for this class was generated from the following files: