SS::SimilarityMatrix Class Reference

class representing a similarity matrix, for the SimilarityScore algorithm More...

#include <pp_simscore.hh>

Public Member Functions
Row &	operator[] (int n)
void	addRow (int l, int p)
int	length ()
bool	empty ()

Detailed Description

class representing a similarity matrix, for the SimilarityScore algorithm

Example of the structur of a similarity matrix:

                |         protein sequence         |

             –   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
             ┬   ----XXXXXXXXX---------------------
             │   -----XXXXXXXXX--------------------
  protein-   ┴   ------XXXXXXXXX-------------------
  profile    –
             ┬   ------------XXXXXXXXXXXXXXX-------
             │   -------------XXXXXXXXXXXXXXX------
             │   --------------XXXXXXXXXXXXXXX-----
             ┴   ---------------XXXXXXXXXXXXXXX----
             –   ---------------------------------X

 

Contains a vector of Row, each row can be accessed by [ ]. A new row can be added with the method addRow.

Author

Lars Gabriel

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The documentation for this class was generated from the following files:

• include/pp_simscore.hh
• src/pp_simscore.cc