SegProbs Class Reference

another class for caching probabilities of sequence segments More...

#include <statemodel.hh>

Public Member Functions
	SegProbs (const char *dna, int k, bool forwardStrand=true)
void	setEmiProbs (vector< Double > *emiprobs, int from=-1, int to=-1)
Double	getSeqProb (int from, int to)
int	getN ()

Protected Attributes
const char *	dna
int	n
int	k
Seq2Int	s2i
vector< Double > *	emiprobs
Double *	cumProds
bool	forwardStrand

Detailed Description

another class for caching probabilities of sequence segments

idea: cumulative product => get segment prob in constant time via a ratio

Author

Emmanouil Stafilarakis

Mario Stanke

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The documentation for this class was generated from the following files:

• include/statemodel.hh
• src/statemodel.cc