SeqIntKey Class Reference

SeqIntKey encodes the start position and length of a sequence interval in a 64 bit integer. More...

#include <liftover.hh>

Public Member Functions
	SeqIntKey (int_fast64_t start, int_fast64_t len, int_fast64_t addInfo)
	SeqIntKey (int_fast64_t k)
int_fast64_t	getStart () const
int_fast64_t	getLen () const
int_fast64_t	getAddInfo () const
int_fast64_t	getKey () const

Detailed Description

SeqIntKey encodes the start position and length of a sequence interval in a 64 bit integer.

bits 42 15 7
|-----------------—|------------—|----—|
start position length

7 extra bits for additional information (optional) f.e. if sequence interval is an exon, 5 extra bits for type and 2 extra bits for lenMod3

Author

Stefanie Koenig

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The documentation for this class was generated from the following file:

• include/liftover.hh