PP::CandidateCollection Struct Reference

Public Types
typedef deque< ScoringCandidate >	SeedCountsQueue

Public Member Functions
	CandidateCollection (const Profile &p, FsSeedCollection &coll)
void	putSeedsToEntries (int currpat, bool reverse)
void	pushSeeds (int t)
void	takeCandidates (int t, FsHitCollection &target, bool reverse)
void	proceed (int t, FsHitCollection &target)
void	debugging_output ()

Public Attributes
vector< SeedCountsQueue >	theCandidates [2]
FsSeedCollection &	seedColl
const Profile &	prfl
vector< int >	maxseedcount
vector< int >	seedhitsizes
vector< int >	candcounts
vector< int >	realhitcounts
deque< twomer >	patterns

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The documentation for this struct was generated from the following file:

• include/pp_fastBlockSearcher.hh