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| CandidateCollection (const Profile &p, FsSeedCollection &coll) |
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void | putSeedsToEntries (int currpat, bool reverse) |
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void | pushSeeds (int t) |
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void | takeCandidates (int t, FsHitCollection &target, bool reverse) |
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void | proceed (int t, FsHitCollection &target) |
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void | debugging_output () |
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vector< SeedCountsQueue > | theCandidates [2] |
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FsSeedCollection & | seedColl |
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const Profile & | prfl |
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vector< int > | maxseedcount |
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vector< int > | seedhitsizes |
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vector< int > | candcounts |
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vector< int > | realhitcounts |
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deque< twomer > | patterns |
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The documentation for this struct was generated from the following file:
