SS::Cell Struct Reference

structure representing one cell of a similarity matrix More...

#include <pp_simscore.hh>

Public Attributes
double	score
std::vector< std::tuple< int, int, char > >	prev

Detailed Description

structure representing one cell of a similarity matrix

Contains the highest similarity score of a position in the similarity matrix, the indices of the cell from which the score was computed and the corresponding type of score.

types: m: match without gaps
       s: gap in the protein sequence
       p: gap in the protein profile
       _: match with gap in the protein sequence in the interblock region

Author

Lars Gabriel

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The documentation for this struct was generated from the following file:

• include/pp_simscore.hh