Visualization

learnMSA can plot a sequence logo based on the model it learned. It can also generate a gif that shows how the logo changes over the course of training.

Arguments

--logo PATH

Produces a pdf of the learned sequence logo. Non-existing directories are created.

--logo_gif PATH

Produces a gif that animates the learned sequence logo over training time. Slows down training significantly and performs a training with simplified setting. The resulting MSA can be less accurate. Non-existing directories are created.