CodonMSA Class Reference

datastructure for the codon alignment More...

#include <codonMSA.hh>

Public Member Functions
	CodonMSA (string filename, double branchlength)
void	readAlignment (string filename)
void	printOmegaStats ()

Public Attributes
vector< string >	aliRows
vector< string >	speciesNames
size_t	aliLen
int	refSpeciesIdx
CodonEvo	codonevo
PhyloTree *	ctree

Detailed Description

datastructure for the codon alignment

Author

Lizzy Gerischer

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The documentation for this class was generated from the following files:

• include/codonMSA.hh
• src/codonMSA.cc