Model typical sequences by pattern frequencies. More...

Public Member Functions
	ContentModel (int k, int f=1)

void	init (int k, int f)

void	setRandomPatProbs ()

string	generateRandSeq (int n, int startFrame=0) const

Double	seqProbUnderModel (const char *seq, int len, int frame) const

BaseCount	getMeanContent ()

Double	getPatProb (int f, int pn) const

vector< Double >	copyPatProb (int f) const

void	setPatProb (const Matrix< Double > &newpatprob)

void	setPatProb (int frame, const vector< Double > &newRow)

int	getNumFrames () const

int	getNumPatterns () const

void	print ()

Static Public Member Functions
static int	randomIndex (const Double *p, int count)

static double	DiscrimDifference (const ContentModel a, const ContentModel b, int n, int fa=0, int fb=0)

Detailed Description

Model typical sequences by pattern frequencies.

The documentation for this class was generated from the following files:

Public Member Functions