MMGroup Class Reference

MMGroup (MM = Merkmal = Feature) More...

#include <merkmal.hh>

Inheritance diagram for MMGroup:

Public Member Functions
	MMGroup (string name)
void	registerPars (Parameters *parameters, double alphavalue=1.0)
virtual string	verbalDescription (int index)=0
virtual Double *	getFactor (int index)=0
virtual void	smooth ()
void	addCount (int index, int count=1)
int	getOffset ()
void	setOffset (int offset)
void	setName (string name)
virtual int	getNumPars ()

Protected Attributes
string	parname
int	numPars

Detailed Description

MMGroup (MM = Merkmal = Feature)

The derived classes contain a group of parameters, e.g. a motif or an emission probability matrix. As an example take the emission probabilities of exons. Here we have one parameter for every reading frame f and every pattern number p.
The derived class FramedEmiProb contains the matrix of parameters and implements a function int getIndex(f,p) for intuitive access to the linear vector of parameters.

Author

Mario Stanke

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The documentation for this class was generated from the following files:

• include/merkmal.hh
• src/merkmal.cc