StatePath Class Reference

A path through the Hidden-Markov-Model states. More...

#include <gene.hh>

Public Member Functions
void	push (State *st)
int	size ()
void	print ()
Transcript *	projectOntoGeneSequence (const char *genenames)
void	reverse ()
bool	operator== (const StatePath &other) const
bool	operator< (const StatePath &other) const

Static Public Member Functions
static StatePath *	condenseStatePath (StatePath *oldpath)
static StatePath *	getInducedStatePath (Transcript *genelist, long dnalen, bool printErrors=true)

Public Attributes
string	seqname
State *	first
Double	pathemiProb
int	intron_d
list< PP::Match >	proteinMatches

Detailed Description

A path through the Hidden-Markov-Model states.

Author

Mario Stanke

Member Function Documentation

print()

void StatePath::print

(

)

@memo A path through the Hidden-Markov-Model states

Author

Mario Stanke

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The documentation for this class was generated from the following files:

• include/gene.hh
• src/gene.cc