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- A
- adl_serializer (nlohmann)
- AliEdge
- Alignment
- AlignmentElement (SS)
- AlignmentRow
- AliGraph
- AliNode
- AliPath
- AltGene
- Ancestor
- AnnoSeqGeneIterator
- AnnoSequence
- Annotation
- AugustusGraph
- B
- BacktrackAlignDB (SS)
- BaseCount
- basic_json (nlohmann)
- BaumWelch
- binary_reader (nlohmann::detail)
- binary_writer (nlohmann::detail)
- BinnedMMGroup
- Bitmask
- Block (PP)
- BlockScoreType (PP)
- BonusProbEntry (PP)
- BonusProbType (PP)
- boundaries (nlohmann::detail::dtoa_impl)
- byte_container_with_subtype (nlohmann)
- C
- cached_power (nlohmann::detail::dtoa_impl)
- CandidateCollection (PP)
- Cell (SS)
- CodonEvo
- CodonEvoDiscr
- CodonMSA
- Column (PP)
- CompareBoundaryFragment
- CompareStatePathPtr
- CompGenePred
- Composition
- conjunction (nlohmann::detail)
- conjunction< B1 > (nlohmann::detail)
- conjunction< B1, Bn... > (nlohmann::detail)
- Constant
- ContentDecomposition
- ContentModel
- ContentStairs
- CRF
- cumValues
- D
- DbSeqAccess
- detector (nlohmann::detail)
- detector< Default, void_t< Op< Args... > >, Op, Args... > (nlohmann::detail)
- dfs_time_visitor
- Dist
- DistanceType (PP)
- diyfp (nlohmann::detail::dtoa_impl)
- DNA (PP)
- E
- Edge
- EHMMTraining
- EOPList
- Evaluation
- Evidence
- Evo
- exception (nlohmann::detail)
- ExonCandidate
- ExonEvo
- ExonModel
- ExonModelError
- ExonScorer (PP)
- external_constructor (nlohmann::detail)
- external_constructor< value_t::array > (nlohmann::detail)
- external_constructor< value_t::binary > (nlohmann::detail)
- external_constructor< value_t::boolean > (nlohmann::detail)
- external_constructor< value_t::number_float > (nlohmann::detail)
- external_constructor< value_t::number_integer > (nlohmann::detail)
- external_constructor< value_t::number_unsigned > (nlohmann::detail)
- external_constructor< value_t::object > (nlohmann::detail)
- external_constructor< value_t::string > (nlohmann::detail)
- F
- Feature
- FeatureCollection
- FeatureTypeInfo
- file_input_adapter (nlohmann::detail)
- fragment
- FramedPatMMGroup
- FreqSegment
- from_json_fn (nlohmann::detail)
- FsHitCollection (PP)
- FsHitType (PP)
- FsSeedCollection (PP)
- G
- GBError
- GBFeature
- GBPositions
- GBProcessor
- GBSplitter
- Gene
- GeneMSA
- GeneticCode
- GenomicMSA
- Goto_line_after
- Graph
- H
- has_from_json (nlohmann::detail)
- has_from_json< BasicJsonType, T, enable_if_t< !is_basic_json< T >::value > > (nlohmann::detail)
- has_non_default_from_json (nlohmann::detail)
- has_non_default_from_json< BasicJsonType, T, enable_if_t< !is_basic_json< T >::value > > (nlohmann::detail)
- has_to_json (nlohmann::detail)
- has_to_json< BasicJsonType, T, enable_if_t< !is_basic_json< T >::value > > (nlohmann::detail)
- hash< nlohmann::json > (std)
- HelpException
- HintGroup
- HitSequence (PP)
- HitSequenceCollection (PP)
- HitSequenceList (PP)
- HitSequenceNode (PP)
- I
- IdxSortCriterion
- IGenicModel
- IGenicModelError
- index_sequence (nlohmann::detail)
- input_stream_adapter (nlohmann::detail)
- internal_iterator (nlohmann::detail)
- IntronModel
- IntronModelError
- IntronProfile (PP)
- invalid_iterator (nlohmann::detail)
- InvalidNucleotideError
- is_basic_json (nlohmann::detail)
- is_basic_json< NLOHMANN_BASIC_JSON_TPL > (nlohmann::detail)
- is_compatible_array_type (nlohmann::detail)
- is_compatible_array_type_impl (nlohmann::detail)
- is_compatible_array_type_impl< BasicJsonType, CompatibleArrayType, enable_if_t< is_detected< value_type_t, CompatibleArrayType >::value &&is_detected< iterator_t, CompatibleArrayType >::value &&!is_iterator_traits< iterator_traits< CompatibleArrayType > >::value > > (nlohmann::detail)
- is_compatible_integer_type (nlohmann::detail)
- is_compatible_integer_type_impl (nlohmann::detail)
- is_compatible_integer_type_impl< RealIntegerType, CompatibleNumberIntegerType, enable_if_t< std::is_integral< RealIntegerType >::value &&std::is_integral< CompatibleNumberIntegerType >::value &&!std::is_same< bool, CompatibleNumberIntegerType >::value > > (nlohmann::detail)
- is_compatible_object_type (nlohmann::detail)
- is_compatible_object_type_impl (nlohmann::detail)
- is_compatible_object_type_impl< BasicJsonType, CompatibleObjectType, enable_if_t< is_detected< mapped_type_t, CompatibleObjectType >::value &&is_detected< key_type_t, CompatibleObjectType >::value > > (nlohmann::detail)
- is_compatible_string_type (nlohmann::detail)
- is_compatible_string_type_impl (nlohmann::detail)
- is_compatible_string_type_impl< BasicJsonType, CompatibleStringType, enable_if_t< is_detected_exact< typename BasicJsonType::string_t::value_type, value_type_t, CompatibleStringType >::value > > (nlohmann::detail)
- is_compatible_type (nlohmann::detail)
- is_compatible_type_impl (nlohmann::detail)
- is_compatible_type_impl< BasicJsonType, CompatibleType, enable_if_t< is_complete_type< CompatibleType >::value > > (nlohmann::detail)
- is_complete_type (nlohmann::detail)
- is_complete_type< T, decltype(void(sizeof(T)))> (nlohmann::detail)
- is_constructible_array_type (nlohmann::detail)
- is_constructible_array_type_impl (nlohmann::detail)
- is_constructible_array_type_impl< BasicJsonType, ConstructibleArrayType, enable_if_t< !std::is_same< ConstructibleArrayType, typename BasicJsonType::value_type >::value &&std::is_default_constructible< ConstructibleArrayType >::value &&(std::is_move_assignable< ConstructibleArrayType >::value||std::is_copy_assignable< ConstructibleArrayType >::value)&&is_detected< value_type_t, ConstructibleArrayType >::value &&is_detected< iterator_t, ConstructibleArrayType >::value &&is_complete_type< detected_t< value_type_t, ConstructibleArrayType > >::value > > (nlohmann::detail)
- is_constructible_array_type_impl< BasicJsonType, ConstructibleArrayType, enable_if_t< std::is_same< ConstructibleArrayType, typename BasicJsonType::value_type >::value > > (nlohmann::detail)
- is_constructible_object_type (nlohmann::detail)
- is_constructible_object_type_impl (nlohmann::detail)
- is_constructible_object_type_impl< BasicJsonType, ConstructibleObjectType, enable_if_t< is_detected< mapped_type_t, ConstructibleObjectType >::value &&is_detected< key_type_t, ConstructibleObjectType >::value > > (nlohmann::detail)
- is_constructible_string_type (nlohmann::detail)
- is_constructible_string_type_impl (nlohmann::detail)
- is_constructible_string_type_impl< BasicJsonType, ConstructibleStringType, enable_if_t< is_detected_exact< typename BasicJsonType::string_t::value_type, value_type_t, ConstructibleStringType >::value > > (nlohmann::detail)
- is_constructible_tuple (nlohmann::detail)
- is_constructible_tuple< T1, std::tuple< Args... > > (nlohmann::detail)
- is_getable (nlohmann::detail)
- is_iterator_of_multibyte (nlohmann::detail)
- is_iterator_traits (nlohmann::detail)
- is_iterator_traits< iterator_traits< T > > (nlohmann::detail)
- is_json_ref (nlohmann::detail)
- is_json_ref< json_ref< T > > (nlohmann::detail)
- is_sax (nlohmann::detail)
- is_sax_static_asserts (nlohmann::detail)
- iter_impl (nlohmann::detail)
- iteration_proxy (nlohmann::detail)
- iteration_proxy_value (nlohmann::detail)
- HitSequenceNode::iterator (PP)
- iterator_input_adapter (nlohmann::detail)
- iterator_input_adapter_factory (nlohmann::detail)
- iterator_input_adapter_factory< IteratorType, enable_if_t< is_iterator_of_multibyte< IteratorType >::value > > (nlohmann::detail)
- iterator_traits (nlohmann::detail)
- iterator_traits< T *, enable_if_t< std::is_object< T >::value > > (nlohmann::detail)
- iterator_traits< T, enable_if_t< !std::is_pointer< T >::value > > (nlohmann::detail)
- iterator_types (nlohmann::detail)
- iterator_types< It, void_t< typename It::difference_type, typename It::value_type, typename It::pointer, typename It::reference, typename It::iterator_category > > (nlohmann::detail)
- J
- json_pointer (nlohmann)
- json_ref (nlohmann::detail)
- json_reverse_iterator (nlohmann::detail)
- json_sax (nlohmann)
- json_sax_acceptor (nlohmann::detail)
- json_sax_dom_callback_parser (nlohmann::detail)
- json_sax_dom_parser (nlohmann::detail)
- K
- KeyNotFoundError
- L
- HitSequenceNode::last_iterator (PP)
- less<::nlohmann::detail::value_t > (std)
- LessDereference
- lexer (nlohmann::detail)
- lexer_base (nlohmann::detail)
- LiftOver
- LLDouble
- LocusTree
- LogDouble
- M
- make_index_sequence (nlohmann::detail)
- make_index_sequence< 0 > (nlohmann::detail)
- make_index_sequence< 1 > (nlohmann::detail)
- make_void (nlohmann::detail)
- Match (PP)
- Matrix
- MEApath
- MemSeqAccess
- merge_and_renumber (nlohmann::detail)
- merge_and_renumber< index_sequence< I1... >, index_sequence< I2... > > (nlohmann::detail)
- MMGroup
- Motif
- MsaInsertion
- MsaSignature
- MultiTargetExonScorer (PP)
- N
- NAMGene
- NAMGeneError
- NcModel
- NcModelError
- Node
- nonesuch (nlohmann::detail)
- NoSubmapFoundError
- O
- OpenReadingFrame
- OptionListItem
- OptionsList
- ordered_map (nlohmann)
- ORF
- OrthoExon
- OrthoGene
- OrthoGraph
- other_error (nlohmann::detail)
- out_of_range (nlohmann::detail)
- output_adapter (nlohmann::detail)
- output_adapter_protocol (nlohmann::detail)
- output_stream_adapter (nlohmann::detail)
- output_string_adapter (nlohmann::detail)
- output_vector_adapter (nlohmann::detail)
- P
- Parameters
- parse_error (nlohmann::detail)
- parser (nlohmann::detail)
- Parsimony
- PartParseError (PP)
- PartScoreType (PP)
- PatMMGroup
- PhyloTree
- posElements
- Position (PP)
- position_t (nlohmann::detail)
- PredictionRun
- PredictionScheme
- PrflAlignment (SS)
- primitive_iterator_t (nlohmann::detail)
- priority_tag (nlohmann::detail)
- priority_tag< 0 > (nlohmann::detail)
- Profile (PP)
- ProfileInsigError (PP)
- ProfileMap
- ProfileNotFoundError (PP)
- ProfileParseError (PP)
- ProfileReadError (PP)
- ProjectError
- Properties
- PropertiesError
- ProteinSequence (SS)
- ptr_comparison
- R
- RandSeqAccess
- Range (PP)
- HitSequenceNode::reverse_iterator (PP)
- Row (SS)
- S
- ScoringCandidate (PP)
- SegProbs
- SegSortCriterion
- Seq2Int
- SeqIntKey
- SequenceFeatureCollection
- serializer (nlohmann::detail)
- Match::shift (PP)
- SimilarityMatrix (SS)
- SimilarityScore (SS)
- SingleTargetExonScorer (PP)
- Smooth
- SnippetList
- SnippetListItem
- SnippetProbs
- SortCriterion
- span_input_adapter (nlohmann::detail)
- SpeciesCollection
- SpeciesGraph
- SpecifiedTypeError
- SQLiteDB
- SrcEvidence
- State
- Statement
- StateModel
- StatePath
- StatePathCollection
- static_const (nlohmann::detail)
- Status
- StringAlignment
- SubmapEmptyError
- SubstateId
- SubstateModel (PP)
- T
- to_json_fn (nlohmann::detail)
- Tokenizer
- train_data
- TrainingData
- Transcript
- Treenode
- tuple_element< N, ::nlohmann::detail::iteration_proxy_value< IteratorType > > (std)
- tuple_size<::nlohmann::detail::iteration_proxy_value< IteratorType > > (std)
- twomer (PP)
- type_error (nlohmann::detail)
- U
- UtrModel
- UtrModelError
- V
- ValueError
- ValueFormatError
- ViterbiColumnType
- ViterbiEntryType
- ViterbiMatrixType
- ViterbiSubmapBasetype
- ViterbiSubmapEntry
- ViterbiSubmapType
- W
- wide_string_input_adapter (nlohmann::detail)
- wide_string_input_helper (nlohmann::detail)
- wide_string_input_helper< BaseInputAdapter, 2 > (nlohmann::detail)
- wide_string_input_helper< BaseInputAdapter, 4 > (nlohmann::detail)